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S3-TTA: Scale-Style Selection for Test-Time Augmentation in Biomedical Image Segmentation
IEEE International Symposium on Biomedical Imaging (ISBI).
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Vimo: Visual Analysis of Neuronal Connectivity Motifs
IEEE Transactions on Visualization and Computer Graphics (IEEE VIS). -
Rapid Prototyping for Coordinated Views of Multi-scale Spatial and Abstract Data: A Grammar-based Approach
Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM). -
An Out-of-Domain Synapse Detection Challenge for Microwasp Brain Connectomes
(Challenge at IEEE ISBI).
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A Survey of Visualization and Analysis in High-Resolution Connectomics
Computer Graphics Forum (EuroVis). -
Instance Segmentation of Unlabeled Modalities via Cyclic Segmentation GAN
arXiv preprint arXiv:2204.03082. -
Scalable Biologically-Aware Skeleton Generation for Connectomic Volumes
IEEE transactions on medical imaging.
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AxonEM Dataset: 3D Axon Instance Segmentation of Brain Cortical Regions
arXiv preprint arXiv:2107.05451 (MICCAI). -
VICE: Visual Identification and Correction of Neural Circuit Errors
To appear in the 23rd EG Conference on Visualization. -
Consistent Recurrent Neural Networks for 3D Neuron Segmentation
To appear in the 2021 IEEE 18th International Symposium on Biomedical Imaging.
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MitoEM Dataset: Large-scale 3D Mitochondria Instance Segmentation from EM Images
Springer: International Conference on Medical Image Computing and Computer-Assisted Intervention (International Conference on Medical Image Computing and Computer Assisted Intervention). -
Two Stream Active Query Suggestion for Active Learning in Connectomics
Proceedings of the European Conference on Computer Vision (ECCV). -
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A Topological Nomenclature for 3D Shape Analysis in Connectomics
The IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops.
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Synapse-Aware Skeleton Generation for Neural Circuits
Springer: International Conference on Medical Image Computing and Computer-Assisted Intervention. -
Biologically-Constrained Graphs for Global Connectomics Reconstruction
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR).
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Detecting Synapse Location and Connectivity by Signed Proximity Estimation and Pruning with Deep Nets
Proceedings of the European Conference on Computer Vision (ECCV) Workshop. -
Efficient Correction for EM Connectomics with Skeletal Representation
British Machine Vision Conference (BMVC). -
Detecting Synapse Location & Connectivity by Signed Proximity Estimation and Pruning with Deep Nets
European Conference on Computer Vision - Bioimage Computing Workshop (ECCVw). -
Parallel Separable 3D Convolution for Video and Volumetric Data Understanding
British Machine Vision Conference (BMVC). -
Guided Proofreading of Automatic Segmentations for Connectomics
The IEEE Conference on Computer Vision and Pattern Recognition (CVPR). -
Abstractocyte: A Visual Tool for Exploring Nanoscale Astroglial Cells
IEEE Transactions on Visualization and Computer Graphics.
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Compresso: Efficient Compression of Segmentation Data For Connectomics
Springer: International Conference on Medical Image Computing and Computer-Assisted Intervention.
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Automatic Neural Reconstruction from Petavoxel of Electron Microscopy Data
Cambridge Univ Press: Microscopy and Microanalysis. -
Imaging a 1 mm3 Volume of Rat Cortex Using a MultiBeam SEM
Cambridge Univ Press: Microscopy and Microanalysis.
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An Automated Images-to-Graphs Framework for High Resolution Connectomics
Frontiers in neuroinformatics. -
Large-Scale Automatic Reconstruction of Neuronal Processes from Electron Microscopy Images
Medical Image Analysis. -
NeuroBlocks - Visual Tracking of Segmentation and Proofreading for Large Connectomics Projects
IEEE Transactions on Visualization and Computer Graphics (Proceedings IEEE SciVis 2015).
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NeuroLines: A Subway Map Metaphor for Visualizing Nanoscale Neuronal Connectivity
IEEE Transactions on Visualization and Computer Graphics. -
Design and Evaluation of Interactive Proofreading Tools for Connectomics
IEEE Transactions on Visualization and Computer Graphics. -
Candidate Sampling for Neuron Reconstruction From Anisotropic Electron Microscopy Volumes
Springer: International Conference on Medical Image Computing and Computer-Assisted Intervention. -
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Reconstructing loopy curvilinear structures using integer programming
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition. -
ConnectomeExplorer: Query-Guided Visual Analysis of Large Volumetric Neuroscience Data
IEEE Transactions on Visualization and Computer Graphics. -
Exploring the Connectome - Petascale Volume Visualization of Microscopy Data Streams
IEEE Computer Graphics and Applications. -
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Segmenting Planar Superpixel Adjacency Graphs w.r.t. Non-planar Superpixel Affinity Graphs
Energy Minimization Methods in Computer Vision and Pattern Recognition (EMMCVPR).
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Interactive Volume Exploration of Petascale Microscopy Data Streams Using a Visualization-Driven Virtual Memory Approach
IEEE Transactions on Visualization and Computer Graphics (SciVistextquoteright12). -
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Distributed Terascale Volume Visualization Using Distributed Shared Virtual Memory
IEEE: Large Data Analysis and Visualization (LDAV), 2011 IEEE Symposium on. -
Demand-driven volume rendering of terascale EM data
International Conference on Computer Graphics and Interactive Techniques, SIGGRAPH 2011, Vancouver, BC, Canada, August 7-11, 2011, Talks Proceedings. -
Detection of Neuron Membranes in Electron Microscopy Images using Multi-scale Context and Radon-like Features
Springer: International Conference on Medical Image Computing and Computer-assisted Intervention. -
Segmentation Fusion for Connectomics
IEEE: Proceedings of the IEEE International Conference on Computer Vision (ICCV).
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Radon-Like Features and their Application to Connectomics
Computer Vision and Pattern Recognition Workshops (CVPRW). -
SSECRETT and NeuroTrace: Interactive Visualization and Analysis Tools for Large-Scale Neuroscience Datasets
IEEE Computer Graphics and Applications. -
Interactive Histology of Large-Scale Biomedical Image Stacks
IEEE Transactions on Visualization and Computer Graphics.
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Multiphase Geometric Couplings for the Segmentation of Neural Processes
Proceedings of IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR).