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EmbryoProfiler: A Visual Clinical Decision Support System for IVF
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IEEE Transactions on Visualization and Computer Graphics (IEEE VIS). -
MoMo - Combining Neuron Morphology and Connectivity for Interactive Motif Analysis in Connectomes
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IEEE Transactions on Visualization on Computer Graphics (IEEE VIS). -
SynAnno: Interactive Guided Proofreading of Synaptic Annotations
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IEEE Transactions on Visualization and Computer Graphics (IEEE VIS). -
SEAL: Spatially-resolved Embedding Analysis with Linked Imaging Data
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IEEE Transactions on Visualization on Computer Graphics (IEEE VIS 2025). -
niiv: Interactive Self-supervised Neural Implicit Isotropic Volume Reconstruction
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MICCAI Workshop on Efficient Medical AI (EMA). -
The State of Single-Cell Atlas Data Visualization in the Biological Literature
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IEEE Computer Graphics and Applications.
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Cell2Cell: Explorative Cell Interaction Analysis in Multi-Volumetric Tissue Data
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Transactions on Visualization and Computer Graphics (IEEE VIS). -
psudo: Exploring Multi-Channel Biomedical Image Data with Spatially and Perceptually Optimized Pseudocoloring
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Computer Graphics Forum (EuroVis 2024).
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Vimo: Visual Analysis of Neuronal Connectivity Motifs
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IEEE Transactions on Visualization and Computer Graphics (IEEE VIS). -
Rapid Prototyping for Coordinated Views of Multi-scale Spatial and Abstract Data: A Grammar-based Approach
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Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM). -
RibSeg v2: A Large-scale Benchmark for Rib Labeling and Anatomical Centerline Extraction
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IEEE Transactions on Medical Imaging (IEEE TMI).
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Visinity: Visual Spatial Neighborhood Analysis for Multiplexed Tissue Imaging Data
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IEEE Transactions on Visualization and Computer Graphics (IEEE VIS).
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Narrative Online Guides for the Interpretation of Digital-Pathology Images and Tissue-Atlas Data
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Nature Biomedical Engineering. -
Scope2Screen: Focus+Context Techniques for Pathology TumorAssessment in Multivariate Image Data
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IEEE Transactions on Visualization and Computer Graphics (IEEE VIS). -
VICE: Visual Identification and Correction of Neural Circuit Errors
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To appear in the 23rd EG Conference on Visualization.
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Minerva: a light-weight, narrative image browser for multiplexed tissue images
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Journal of open source software.
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Facetto: Combining Unsupervised and Supervised Learning for Hierarchical Phenotype Analysis in Multi-Channel Image Data
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IEEE Transactions on Visualization and Computer Graphics. -
Pattern-Driven Navigation in 2D Multiscale Visualizations with Scalable Insets
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IEEE Transactions on Visualization and Computer Graphics (InfoVis ’19).
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Abstractocyte: A Visual Tool for Exploring Nanoscale Astroglial Cells
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IEEE Transactions on Visualization and Computer Graphics. -
HiPiler: Visual Exploration Of Large Genome Interaction Matrices With Interactive Small Multiples
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IEEE Transactions on Visualization and Computer Graphics (InfoVis ’17).
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Screenit: Visual Analysis of Cellular Screens
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IEEE Transactions on Visualization and Computer Graphics.
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Vials: Visualizing Alternative Splicing of Genes
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IEEE Transactions on Visualization and Computer Graphics.
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VESICLE: Volumetric Evaluation of Synaptic Interfaces using Computer Vision at Large Scale
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BMVA Press: Proceedings of the British Machine Vision Conference (BMVC).
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Design and Evaluation of Interactive Proofreading Tools for Connectomics
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IEEE Transactions on Visualization and Computer Graphics. -
Candidate Sampling for Neuron Reconstruction From Anisotropic Electron Microscopy Volumes
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Springer: International Conference on Medical Image Computing and Computer-Assisted Intervention. -
Characterizing Cancer Subtypes using Dual Analysis in Caleydo
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IEEE Computer Graphics and Applications.
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ConnectomeExplorer: Query-Guided Visual Analysis of Large Volumetric Neuroscience Data
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IEEE Transactions on Visualization and Computer Graphics. -
Entourage: Visualizing Relationships between Biological Pathways using Contextual Subsets
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IEEE Transactions on Visualization and Computer Graphics. -
Exploring the Connectome - Petascale Volume Visualization of Microscopy Data Streams
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IEEE Computer Graphics and Applications.
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A lattice boltzmann simulation of hemodynamics in a patient-specific aortic coarctation model
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Springer-Verlag: Proceedings of the Third International Conference on Statistical Atlases and Computational Models of the Heart: Imaging and Modelling Challenges.
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Evaluation of Artery Visualizations for Heart Disease Diagnosis
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IEEE Transactions on Visualization and Computer Graphics.
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SSECRETT and NeuroTrace: Interactive Visualization and Analysis Tools for Large-Scale Neuroscience Datasets
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IEEE Computer Graphics and Applications. -
Interactive Histology of Large-Scale Biomedical Image Stacks
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IEEE Transactions on Visualization and Computer Graphics. -
MulteeSum: A Tool for Comparative Spatial and Temporal Gene Expression Data
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IEEE Transactions on Visualization and Computer Graphics.
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Scalable and Interactive Segmentation and Visualization of Neural Processes in EM Datasets
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IEEE Transactions on Visualization and Computer Graphics.
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Generation Of Transfer Functions with Stochastic Search Techniques
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IEEE: Proceedings of the 7th conference on Visualization.
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Cube-3: A Real-Time Architecture for High-Resolution Volume Visualization
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IEEE: Proceedings of the 1994 symposium on Volume visualization.